8HJY
Crystal structure of a cupin protein (tm1459, H52A/H58E/F104W mutant) in copper (Cu) substituted form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.700, 57.720, 75.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 99.000 - 1.180 |
Rwork | 0.152 |
R-free | 0.19130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6l2e |
RMSD bond length | 0.011 |
RMSD bond angle | 0.028 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | SHELXL (2017/01) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 99.000 | 1.250 |
High resolution limit [Å] | 1.180 | 1.180 |
Rmerge | 0.073 | 0.789 |
Number of reflections | 141051 | 22674 |
<I/σ(I)> | 8.78 | 2.02 |
Completeness [%] | 99.0 | 98.4 |
Redundancy | 3.45 | 3.42 |
CC(1/2) | 0.995 | 0.706 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 25% w/v Jeffamine ED-2001, 0.1M MES pH 6.0 |