8HIS
Crystal structure of DNA decamer containing GuNA[Me,tBu]
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-03-26 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 25.070, 44.360, 45.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.130 - 2.010 |
R-factor | 0.1831 |
Rwork | 0.178 |
R-free | 0.22820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1i5w |
RMSD bond length | 0.005 |
RMSD bond angle | 1.911 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.130 | 2.070 |
High resolution limit [Å] | 2.010 | 2.010 |
Rmerge | 0.042 | 0.055 |
Rmeas | 0.046 | 0.060 |
Rpim | 0.018 | 0.023 |
Total number of observations | 1890 | |
Number of reflections | 6474 | 294 |
<I/σ(I)> | 55.1 | 43.8 |
Completeness [%] | 99.7 | |
Redundancy | 6.5 | 6.4 |
CC(1/2) | 0.999 | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040M Sodium cacodylate trihydrate pH 6.0, 0.012M Spermine tetrahydrochloride, 0.080M Potassium chloride, 0.020M Barium chloride |