Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8HH0

Peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL45XU
Synchrotron siteSPring-8
BeamlineBL45XU
Temperature [K]100
Detector technologyPIXEL
Collection date2020-12-05
DetectorDECTRIS PILATUS 6M
Wavelength(s)1
Spacegroup nameP 41 21 2
Unit cell lengths61.090, 61.090, 236.919
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.367 - 2.350
Rwork0.205
R-free0.25290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6iu0
RMSD bond length0.007
RMSD bond angle1.548
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.3672.430
High resolution limit [Å]2.3502.350
Rmerge0.1660.603
Number of reflections196571863
<I/σ(I)>6.4
Completeness [%]99.9
Redundancy6
CC(1/2)0.9850.816
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M ammonium acetate 0.1 M sodium acetate (pH 4.6) 30% w/v polyethylene glycol 4,000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon