8HAP
Crystal structure of thermostable acetaldehyde dehydrogenase from hyperthermophilic archaeon Sulfolobus tokodaii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 164.075, 75.356, 105.305 |
Unit cell angles | 90.00, 124.64, 90.00 |
Refinement procedure
Resolution | 46.600 - 2.200 |
R-factor | 0.1702 |
Rwork | 0.168 |
R-free | 0.21360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pqa |
RMSD bond length | 0.009 |
RMSD bond angle | 1.560 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 86.635 | 46.553 | 2.320 |
High resolution limit [Å] | 2.197 | 6.950 | 2.200 |
Rmerge | 0.030 | 0.588 | |
Rmeas | 0.104 | 0.036 | 0.704 |
Rpim | 0.056 | 0.020 | 0.383 |
Total number of observations | 182293 | 5652 | 25041 |
Number of reflections | 53563 | 1694 | 7698 |
<I/σ(I)> | 9.9 | 28.8 | 2.3 |
Completeness [%] | 99.0 | 95.8 | 97.7 |
Redundancy | 3.4 | 3.3 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 100 mM sodium phosphate dibasic/citric acid (pH 4.2), 200 mM sodium chloride, 10% (v/v) polyethylene glycol (PEG) 3000 |