8HA1
Crystal structure of voltage-gated sodium channel NavAb N49K/L176G mutant in sodium ion condition
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 126.910, 126.910, 201.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.910 - 3.500 |
R-factor | 0.2916 |
Rwork | 0.291 |
R-free | 0.29670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yuc |
RMSD bond length | 0.004 |
RMSD bond angle | 0.735 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.970 | 3.600 |
High resolution limit [Å] | 3.500 | 3.500 |
Number of reflections | 10747 | 728 |
<I/σ(I)> | 20.78 | |
Completeness [%] | 96.6 | |
Redundancy | 39.8 | |
CC(1/2) | 1.000 | 0.560 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 9%-11% PEG MME 2000, 100 mM sodium chloride, 100 mM magnesium nitrate, 25 mM cadmium nitrate, 100 mM Tris-HCl, pH 8.4 |