8H58
Crystal structure of YhaJ effector binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-03-24 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97933 |
Spacegroup name | H 3 |
Unit cell lengths | 215.193, 215.193, 263.409 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.905 - 2.639 |
Rwork | 0.177 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AF_AFP67660F1 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.647 |
Data reduction software | HKL-2000 (v715) |
Data scaling software | HKL-2000 (v715) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.910 | 2.740 |
High resolution limit [Å] | 2.639 | 2.639 |
Rmerge | 0.088 | 0.386 |
Number of reflections | 131090 | 12621 |
<I/σ(I)> | 10.9 | 2.6 |
Completeness [%] | 98.2 | 94.5 |
Redundancy | 4.1 | 2.8 |
CC(1/2) | 0.995 | 0.352 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 2.8M sodium acetate trihydrate pH 7.0 |