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8H28

Crystal structure of the K87V mutant of cytochrome c' from Shewanella benthica DB6705

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2021-03-22
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.540
Spacegroup nameP 1 21 1
Unit cell lengths44.773, 68.259, 45.507
Unit cell angles90.00, 112.04, 90.00
Refinement procedure
Resolution37.430 - 2.060
R-factor0.2072
Rwork0.202
R-free0.25450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6a3k
RMSD bond length0.013
RMSD bond angle1.297
Data reduction softwared*TREK (9.9.9.8 W9DSSI)
Data scaling softwared*TREK (9.9.9.8 W9DSSI)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1-4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.18042.1802.130
High resolution limit [Å]2.0604.4402.060
Rmerge0.0960.0480.466
Rmeas0.1130.0570.547
Total number of observations5694359275509
Number of reflections1561616161528
<I/σ(I)>717.81.9
Completeness [%]99.099.697.9
Redundancy3.623.593.61
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277400 mM sodium phosphate monobasic / 1600 mM potassium phosphate dibasic, 100 mM imidazole / hydrochloric acid pH 8.0, and 200 mM sodium chloride

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PDB entries from 2024-05-15

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