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8H0A

Structure of the thermolabile hemolysin from Vibrio alginolyticus (in complex with lauric acid)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL18U1
Synchrotron siteSSRF
BeamlineBL18U1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-18
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97915
Spacegroup nameP 1 21 1
Unit cell lengths65.407, 72.616, 82.994
Unit cell angles90.00, 102.38, 90.00
Refinement procedure
Resolution28.400 - 1.940
R-factor0.195
Rwork0.193
R-free0.23100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6jkz
RMSD bond length0.010
RMSD bond angle0.970
Data reduction softwareXDS (Jan 31, 2020, built on 20200417)
Data scaling softwareAimless (0.5.29)
Phasing softwarePHASER (2.7.17)
Refinement softwareBUSTER (2.10.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.8871.974
High resolution limit [Å]1.9401.940
Rmeas0.0710.759
Rpim0.0270.287
Number of reflections559272776
<I/σ(I)>18.22.3
Completeness [%]99.398.4
Redundancy6.86.9
CC(1/2)0.9990.921
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293The crystal of ValTLH in complex with lauric acid was grown in a drop containing 1.0 ul of protein solution (10 mg/ml in the buffer 10 mM HEPES pH 7.5, 150 mM NaCl, 1 mM DTT, 200 mM NDSB201 with 3 mM sodium laurate) and 1.0 ul of reservoir solution (17.5% polyethylene glycol 3350, 0.2 M magnesium formate).

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