8GZI
Crystal Structure of ApiI in complex with SAH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 98.024, 98.024, 80.257 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.521 - 2.122 |
R-factor | 0.205122000596 |
Rwork | 0.203 |
R-free | 0.25368 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wup |
RMSD bond length | 0.008 |
RMSD bond angle | 0.927 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.522 | 2.180 |
High resolution limit [Å] | 2.120 | 2.120 |
Rmerge | 0.087 | 0.577 |
Rmeas | 0.606 | |
Rpim | 0.028 | 0.185 |
Number of reflections | 25591 | 1855 |
<I/σ(I)> | 20 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.9 | 20.7 |
CC(1/2) | 0.999 | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.2 M Sodium chloride, 0.1 M MES pH6, 20%(w/v)PEG 2000 MME |