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8GYJ

Crystal structure of Fic25 complexed with PLP-(5S,6S)-N2-acetyl-DADH adduct from Streptomyces ficellus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-5A
Synchrotron sitePhoton Factory
BeamlineBL-5A
Temperature [K]95
Detector technologyPIXEL
Collection date2022-06-25
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0
Spacegroup nameP 65
Unit cell lengths201.443, 201.443, 57.003
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.430 - 1.820
R-factor0.1604
Rwork0.159
R-free0.18510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)8gyh
RMSD bond length0.003
RMSD bond angle1.229
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.4301.850
High resolution limit [Å]1.8201.820
Rmerge0.1130.980
Number of reflections1188075871
<I/σ(I)>17.8
Completeness [%]100.0
Redundancy10.4
CC(1/2)0.9990.827
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.151.1 M Sodium citrate, 0.1 M Imidazole, pH 8.0

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PDB entries from 2025-12-03

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