8GYJ
Crystal structure of Fic25 complexed with PLP-(5S,6S)-N2-acetyl-DADH adduct from Streptomyces ficellus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2022-06-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 65 |
Unit cell lengths | 201.443, 201.443, 57.003 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.430 - 1.820 |
R-factor | 0.1604 |
Rwork | 0.159 |
R-free | 0.18510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8gyh |
RMSD bond length | 0.003 |
RMSD bond angle | 1.229 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.430 | 1.850 |
High resolution limit [Å] | 1.820 | 1.820 |
Rmerge | 0.113 | 0.980 |
Number of reflections | 118807 | 5871 |
<I/σ(I)> | 17.8 | |
Completeness [%] | 100.0 | |
Redundancy | 10.4 | |
CC(1/2) | 0.999 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 1.1 M Sodium citrate, 0.1 M Imidazole, pH 8.0 |