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8GYD

Structure of Schistosoma japonicum Glutathione S-transferase bound with the ligand complex of 16

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-27
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.976
Spacegroup nameP 65
Unit cell lengths64.149, 64.149, 227.652
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution16.900 - 1.700
R-factor0.1943
Rwork0.193
R-free0.21520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1m9b
RMSD bond length0.008
RMSD bond angle0.920
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.4 (3-FEB-2022))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]55.5501.730
High resolution limit [Å]1.7001.700
Number of reflections568542979
<I/σ(I)>36.2
Completeness [%]98.1
Redundancy20.6
CC(1/2)1.0000.920
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29349% Saturated ammonium sulfate, 0.3 M Sodium acetate, pH 5.6, 2% ethanol, 10 mM DTT

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PDB entries from 2024-05-15

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