8GVB
The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 71.657, 71.657, 381.651 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.010 - 3.200 |
R-factor | 0.2821 |
Rwork | 0.280 |
R-free | 0.32080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vxm |
RMSD bond length | 0.005 |
RMSD bond angle | 0.630 |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.318 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.147 | 2.172 |
Number of reflections | 19722 | 19722 |
<I/σ(I)> | 19.031 | 1.48 |
Completeness [%] | 99.4 | 100 |
Redundancy | 14.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.06 M divalent ions (MgCl2, CaCl2), 0.1 M Tris (pH 8.5), 0.1 M Bicine (pH 8.5) |