8GM3
Vibrio harveyi Holo HphA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-03 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 39.438, 81.080, 135.577 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.586 - 1.727 |
R-factor | 0.2116 |
Rwork | 0.210 |
R-free | 0.25500 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.827 |
Data reduction software | XDS |
Data scaling software | SCALEPACK |
Refinement software | PHENIX (1.13-2998-000) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 69.586 | 1.789 |
High resolution limit [Å] | 1.727 | 1.727 |
Number of reflections | 46308 | 4480 |
<I/σ(I)> | 10.07 | 1.41 |
Completeness [%] | 92.0 | 77.61 |
Redundancy | 2 | 2 |
CC(1/2) | 0.992 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | The initial crystals of PUF1 were observed from a screen condition containing 25% PEG3350, 0.1 M Bis-Tris pH 5.5 with trypsin added to 3.53 mg/mL PUF1 at a 1:100 mass ratio. Further optimization was performed to obtain better crystals that formed in 25% PEG3350, 0.1M Bis-Tris pH 5.0, and 20% glycerol with streak seeding, trypsin at 0.06 mg/mL and PUF1 at 6.64mg/mL |