8GLD
Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 22-392) from Campylobacter jejuni
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-01 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 32 |
Unit cell lengths | 95.311, 95.311, 103.034 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.700 - 2.300 |
R-factor | 0.1568 |
Rwork | 0.152 |
R-free | 0.17970 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.515 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.340 |
High resolution limit [Å] | 2.300 | 6.240 | 2.300 |
Rmerge | 0.148 | 0.048 | 0.782 |
Rmeas | 0.163 | 0.052 | 0.860 |
Rpim | 0.067 | 0.021 | 0.356 |
Number of reflections | 46459 | 2346 | 2322 |
<I/σ(I)> | 5.4 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 5.8 | 5.9 | 5.8 |
CC(1/2) | 0.998 | 0.653 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 166 mM sodium acetate, 28% (w/v) PEG4000, and 80 mM Tris-HCl pH8.5 |