8GHH
Crystal structure of Staphylococcus aureus Lysophosphatidylglycerol phospholipase D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-09-18 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 107.956, 107.956, 138.381 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.560 - 2.100 |
R-factor | 0.1889 |
Rwork | 0.188 |
R-free | 0.21530 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.604 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.560 | 2.150 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.079 | 0.881 |
Rmeas | 0.081 | 0.903 |
Rpim | 0.015 | 0.194 |
Number of reflections | 24165 | 1485 |
<I/σ(I)> | 26.2 | 2.8 |
Completeness [%] | 100.0 | 99.7 |
Redundancy | 28.6 | 20.9 |
CC(1/2) | 0.999 | 0.894 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Phosphate-citrate, sodium dihydrogen phosphate, dipotassium hydrogen phosphate |