8GFC
Crystal structure of soluble lytic transglycosylase Cj0843 of Campylobacter jejuni in complex with Fv17b inhibitor
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL12-1 |
| Synchrotron site | SSRL |
| Beamline | BL12-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-04-23 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.9795 |
| Spacegroup name | I 2 3 |
| Unit cell lengths | 176.494, 176.494, 176.494 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 39.470 - 2.480 |
| R-factor | 0.1802 |
| Rwork | 0.178 |
| R-free | 0.21490 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6cf9 |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.479 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.7) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0349) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 39.470 | 39.470 | 2.590 |
| High resolution limit [Å] | 2.480 | 8.960 | 2.480 |
| Rmerge | 0.148 | 0.093 | 0.992 |
| Rmeas | 0.156 | 0.098 | 1.049 |
| Rpim | 0.048 | 0.030 | 0.336 |
| Total number of observations | 325650 | 7465 | 31163 |
| Number of reflections | 32058 | 736 | 3428 |
| <I/σ(I)> | 8.2 | 17.3 | 1.6 |
| Completeness [%] | 99.3 | 98.9 | 94.1 |
| Redundancy | 10.2 | 10.1 | 9.1 |
| CC(1/2) | 0.995 | 0.993 | 0.736 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.9 | 293 | 0.1 M sodium citrate pH 5.9 and 26% (v/v) PEG 600. Protein buffer was 10 mM HEPES pH 8.0, 200 mM ammonium acetate. |
