8G22
Crystal Structure of the dTDP-4-dehydrorhamnose Reductase from Streptococcus pneumoniae.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-19 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.77482 |
Spacegroup name | H 3 |
Unit cell lengths | 120.178, 120.178, 48.075 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 22.720 - 1.000 |
R-factor | 0.12632 |
Rwork | 0.125 |
R-free | 0.14319 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 1.146 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.020 |
High resolution limit [Å] | 1.000 | 1.000 |
Rmerge | 0.070 | 1.207 |
Rmeas | 0.074 | |
Rpim | 0.025 | 0.456 |
Number of reflections | 138569 | 6926 |
<I/σ(I)> | 28 | 1.9 |
Completeness [%] | 99.1 | 98.3 |
Redundancy | 8 | 7.7 |
CC(1/2) | 0.997 | 0.502 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.3 | 292 | Protein: 3.3 mg/ml, 0.5M Sodium chloride, 0.01M Tris pH 8.3; Screen: PEG's II (H1), 0.01M tri-Sodium citrate, 33% (w/v) PEG6000; |