8FYG
Crystal structure of Hyaluronate lyase A from Cutibacterium acnes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-02-20 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 51.960, 59.420, 125.990 |
Unit cell angles | 90.61, 95.74, 90.08 |
Refinement procedure
Resolution | 19.800 - 2.050 |
R-factor | 0.2259 |
Rwork | 0.225 |
R-free | 0.25790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.547 |
Data reduction software | XDS (VERSION Jun 1, 2017 BUILT=20170923) |
Data scaling software | XSCALE (VERSION Jun 1, 2017 BUILT=20170923) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.800 | 19.800 | 2.100 |
High resolution limit [Å] | 2.050 | 9.170 | 2.050 |
Rmerge | 0.097 | 0.041 | 0.497 |
Rmeas | 0.128 | 0.054 | 0.662 |
Number of reflections | 88266 | 895 | 6191 |
<I/σ(I)> | 7.33 | ||
Completeness [%] | 93.9 | ||
Redundancy | 2.2 | ||
CC(1/2) | 0.991 | 0.995 | 0.623 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291.15 | 0.1 M Na dihydrogen phosphate pH 6.5, 9% PEG 8000, 5 mM TCEP |