8FFA
Crystal structure of Apo Dps protein (PA0962) from Pseudomonas aeruginosa (cubic form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 291 |
Detector technology | PIXEL |
Collection date | 2020-06-01 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 3 |
Unit cell lengths | 223.465, 223.465, 223.465 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.970 - 2.150 |
R-factor | 0.1852 |
Rwork | 0.183 |
R-free | 0.22720 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.050 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19rc5_4043) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.970 | 2.190 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.202 | 2.343 |
Rmeas | 0.207 | 2.400 |
Rpim | 0.045 | 0.518 |
Total number of observations | 4163876 | 210869 |
Number of reflections | 200207 | 9858 |
<I/σ(I)> | 12.5 | 1.7 |
Completeness [%] | 100.0 | |
Redundancy | 20.8 | 21.4 |
CC(1/2) | 0.999 | 0.612 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 1.1 M sodium malonate, 100 mM Hepes, 0.5% (v/v) Jeffamine ED-2001 |