8F8X
Crystal structure of Nb.X0 bound to the afucosylated human IgG1 fragment crystal form II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-19 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.92010 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 125.577, 92.233, 76.497 |
Unit cell angles | 90.00, 117.04, 90.00 |
Refinement procedure
Resolution | 46.120 - 2.600 |
R-factor | 0.2214 |
Rwork | 0.215 |
R-free | 0.28530 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 1.790 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rpim | 0.050 | 0.574 |
Number of reflections | 21352 | 1051 |
<I/σ(I)> | 23.6 | |
Completeness [%] | 90.7 | |
Redundancy | 2.5 | |
CC(1/2) | 0.996 | 0.504 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20 % w/v PEG 6000, 0.1 M Sodium citrate 4.0, 0.2 M Lithium chloride. No additional cryoprotectant. |