8F2T
Antibody Fab directed against SARS-CoV-2 Spike Protein Receptor Binding Domain (RBD)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97934 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 93.941, 60.868, 73.005 |
Unit cell angles | 90.00, 98.75, 90.00 |
Refinement procedure
Resolution | 28.340 - 2.120 |
R-factor | 0.2078 |
Rwork | 0.203 |
R-free | 0.25670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ora |
RMSD bond length | 0.008 |
RMSD bond angle | 1.017 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.340 | 2.160 |
High resolution limit [Å] | 2.110 | 2.110 |
Rmerge | 0.862 | |
Number of reflections | 23030 | 1154 |
<I/σ(I)> | 9.9 | |
Completeness [%] | 97.3 | 65.4 |
Redundancy | 6.59 | 5.5 |
CC(1/2) | 0.920 | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298 | PEG 3350, 25 %, 0.1 M Tris, 0.2 M sodium chloride |