8EVK
Crystal structure of Helicobacter pylori dihydroneopterin aldolase (DHNA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-15 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | I 4 |
Unit cell lengths | 68.081, 68.081, 57.404 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.900 - 1.490 |
R-factor | 0.199 |
Rwork | 0.197 |
R-free | 0.23040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2o90 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.991 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 1.540 |
High resolution limit [Å] | 1.490 | 3.210 | 1.490 |
Rmerge | 0.132 | ||
Rmeas | 0.136 | ||
Rpim | 0.036 | 0.028 | 0.652 |
Number of reflections | 21197 | 2192 | 1769 |
<I/σ(I)> | 13.7 | 20.04 | 1.19 |
Completeness [%] | 98.2 | 99.4 | 82.6 |
Redundancy | 14.1 | 14.8 | 9.4 |
CC(1/2) | 0.999 | 0.993 | 0.547 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | (NH4)2SO4, NaCl, etc. |