8ESU
Myoglobin variant Mb-imi complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-01 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 6 |
Unit cell lengths | 90.425, 90.425, 45.442 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 78.310 - 1.040 |
R-factor | 0.129 |
Rwork | 0.128 |
R-free | 0.14060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6m8f |
RMSD bond length | 0.008 |
RMSD bond angle | 1.019 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 78.310 | 1.060 |
High resolution limit [Å] | 1.040 | 1.040 |
Rmerge | 0.067 | 0.504 |
Rpim | 0.022 | 0.234 |
Number of reflections | 101447 | 4642 |
<I/σ(I)> | 18.2 | 2.7 |
Completeness [%] | 99.6 | |
Redundancy | 9.2 | |
CC(1/2) | 0.995 | 0.817 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 296 | Mb(H64G,V68A) at 3.6 mM in 20 mM Tris-HCl pH 8.4, 1 mM EDTA, was mixed with an equal volume of reservoir solution (200 mM Tris-HCl pH 8.9 and 2.46 M ammonium sulfate). The crystal was dunked in a cryoprotection solution (reservoir buffer supplemented with 9% sucrose (w/v), 2% glucose (w/v), 8% glycerol (v/v), and 8% ethylene glycol (v/v)) prior to being flash-frozen in liquid nitrogen. Note that imidazole was present in lysis buffer at 10 mM prior to two-step purification. |