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8ESL

Bile Salt Hydrolase from a Bacteroidales species with covalent inhibitor bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2022-02-27
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.00
Spacegroup nameP 21 21 21
Unit cell lengths63.142, 66.812, 321.831
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.070 - 3.110
R-factor0.2769
Rwork0.277
R-free0.30510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold2 model of the protein
RMSD bond length0.002
RMSD bond angle0.410
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0703.221
High resolution limit [Å]3.1103.110
Rmerge0.2401.710
Rmeas0.2872.057
Rpim0.1551.115
Number of reflections248352378
<I/σ(I)>3.810.74
Completeness [%]94.880.39
Redundancy3.43.3
CC(1/2)0.9780.121
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M HEPES: NaOH, pH 7.5, 25% (w/v) PEG 1000. 50 mL protein at 2.5 uM was incubated with 50 uM inhibitor for 1h at 37oC. Mixture was washed 3x with buffer in a spin concentrator and then concentrated to 6.77 mg/mL final concentration. Crystals formed in conditions with 1:2 ratio of protein:mother liquor.

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PDB entries from 2024-05-15

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