8ERI
HTLV-1 capsid protein full-length
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-15 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | F 2 2 2 |
Unit cell lengths | 74.079, 128.663, 297.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.630 - 2.250 |
R-factor | 0.2528 |
Rwork | 0.251 |
R-free | 0.28780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold2 prediction |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.640 | 48.640 | 2.320 |
High resolution limit [Å] | 2.250 | 9.000 | 2.250 |
Rmerge | 0.142 | 0.079 | 1.222 |
Rmeas | 0.148 | 0.083 | 1.271 |
Rpim | 0.040 | 0.022 | 0.346 |
Total number of observations | 454329 | 7379 | 36962 |
Number of reflections | 33745 | 593 | 2877 |
<I/σ(I)> | 8.5 | 25.2 | 1.2 |
Completeness [%] | 99.4 | 99.1 | 93.2 |
Redundancy | 13.5 | 12.4 | 12.8 |
CC(1/2) | 0.998 | 0.997 | 0.823 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.1M Na citrate, pH 6.0 8% 2-propanol 23% PEG3350 |