8EQ1
Escherichia coli pyruvate kinase D127N
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2013-08-03 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 76.260, 131.755, 129.091 |
Unit cell angles | 90.00, 107.18, 90.00 |
Refinement procedure
Resolution | 42.630 - 2.320 |
R-factor | 0.2081 |
Rwork | 0.207 |
R-free | 0.22400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yng |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.630 | 2.403 |
High resolution limit [Å] | 2.320 | 2.320 |
Rmerge | 0.105 | 0.839 |
Number of reflections | 105239 | 10525 |
<I/σ(I)> | 5.84 | 1.29 |
Completeness [%] | 99.9 | 99.99 |
Redundancy | 3.2 | 3.2 |
CC(1/2) | 0.992 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.12M (0.2M 1,6-Hexanediol; 0.2M 1-Butanol; 0.2M 1,2-Propanediol; 0.2M 2-Propanol;0.2M 1,4-Butanediol; 0.2M 1,3- Propanediol), 0.1M (1.0M Imidazole; 1.0M MES monohydrate (acid)), 30% v/v (40% v/v Glycerol; 20% w/v PEG 4000) |