8EOH
crystal structure of human Cytochrome P450 8B1 in complex with a C12-Pyridine Containing Steroid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.127, 90.124, 103.018 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.650 - 2.650 |
R-factor | 0.2251 |
Rwork | 0.223 |
R-free | 0.26510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7lyx |
RMSD bond length | 0.015 |
RMSD bond angle | 1.101 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER (1.18.2_3874) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.650 | 2.790 |
High resolution limit [Å] | 2.650 | 2.650 |
Rmerge | 0.186 | 1.773 |
Rmeas | 0.194 | 1.878 |
Rpim | 0.054 | 0.602 |
Number of reflections | 17297 | 2364 |
<I/σ(I)> | 9.5 | 1.3 |
Completeness [%] | 99.2 | 95.4 |
Redundancy | 12.5 | 9.1 |
CC(1/2) | 0.998 | 0.659 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M Sodium malonate pH 8.0, 0.1 M Tris pH 8.0, 30% w/v Polyethylene glycol 1,000 |