8EN5

Structure of GII.4 norovirus in complex with Nanobody 56

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron site	PETRA III, EMBL c/o DESY
Beamline	P14 (MX2)
Temperature [K]	100
Detector technology	PIXEL
Collection date	2020-10-19
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.97658
Spacegroup name	P 1 21 1
Unit cell lengths	61.244, 235.384, 70.566
Unit cell angles	90.00, 104.30, 90.00

Refinement procedure

Resolution	68.380 - 1.600
R-factor	0.1875
Rwork	0.186
R-free	0.21940
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4oos
Data reduction software	MOSFLM
Data scaling software	Aimless
Phasing software	PHENIX
Refinement software	PHENIX (1.19.2_4158)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	68.380	235.380	1.630
High resolution limit [Å]	1.600	8.760	1.600
Rmerge	0.049	0.037	0.412
Rmeas	0.059	0.043	0.486
Rpim	0.031	0.023	0.255
Total number of observations		5705	42518
Number of reflections	480738	1545	12150
<I/σ(I)>	11.7	26.8	2.5
Completeness [%]	98.7	97.8	96.9
Redundancy	3.4	3.7	3.5
CC(1/2)	0.997	0.982	0.832

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		291.15	(10% [w/v] PEG8000 and 0.1 M MES [pH 6.0])