8EN3
Structure of GII.17 norovirus in complex with Nanobody 45
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-22 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 79.495, 71.306, 82.615 |
Unit cell angles | 90.00, 113.32, 90.00 |
Refinement procedure
Resolution | 44.530 - 2.100 |
R-factor | 0.2146 |
Rwork | 0.213 |
R-free | 0.26250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5f4o |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 6.260 | 2.230 |
High resolution limit [Å] | 1.400 | 4.440 | 2.100 |
Rmerge | 0.140 | 1.046 | |
Rmeas | 0.152 | 1.139 | |
Number of reflections | 49644 | 3405 | 7978 |
<I/σ(I)> | 4.9 | 11.73 | 1.54 |
Completeness [%] | 99.8 | 99.7 | 99.7 |
Redundancy | 6.103 | 6.646 | 6.378 |
CC(1/2) | 0.974 | 0.991 | 0.627 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | (1.6 M ammonium sulfate, 0.08 M sodium acetate, and 20% [v/v] glycerol) |