8EM1
Type IIS Restriction Endonuclease PaqCI, DNA Unbound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-19 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 136.620, 136.620, 106.418 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.580 - 2.500 |
R-factor | 0.2137 |
Rwork | 0.211 |
R-free | 0.26650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlpaFold Model |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.100 | 0.055 | 0.970 |
Rmeas | 0.102 | 0.056 | 0.994 |
Rpim | 0.020 | 0.012 | 0.212 |
Total number of observations | 1313372 | ||
Number of reflections | 51645 | 2824 | 2516 |
<I/σ(I)> | 4.6 | ||
Completeness [%] | 100.0 | 100 | 99.6 |
Redundancy | 25.4 | 24.3 | 21 |
CC(1/2) | 0.999 | 0.880 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298 | 25% w/v polyethylene glycol 3350, 0.2 M magnesium chloride hexahydrate, and 0.1 M BIS-TRIS pH 5.5 |