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8EK4

De novo designed ice-binding proteins from twist-constrained helices

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2022-03-14
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.97918
Spacegroup nameP 21 21 21
Unit cell lengths54.582, 67.427, 74.326
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.940 - 2.350
R-factor0.2614
Rwork0.259
R-free0.31370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Designed model
RMSD bond length0.002
RMSD bond angle0.366
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]59.9402.430
High resolution limit [Å]2.3502.350
Rmerge0.1141.379
Rmeas0.119
Rpim0.0330.381
Number of reflections119281172
<I/σ(I)>13.81.55
Completeness [%]99.6
Redundancy13.2
CC(1/2)0.9990.753
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.02M 1,6-hexanediol, 0.02M 1-butanol, 0.02M 1,2-propanediol, 0.02M 2-propanol, 0.02M 2-propanol, 0.02M 1,4-butanediol, 0.02M 1,3-propanediol, 0.0466M pH 8.5 Tris (base), 0.0534M pH 8.5 Bicine, 20% v/v PEG 500 MME, and 10% w/v PEG 20,000

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PDB entries from 2024-05-15

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