8EDY
KRAS4b A146T 1-185 bound to GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-17 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9782 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 78.302, 78.302, 55.848 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.150 - 1.180 |
R-factor | 0.162 |
Rwork | 0.162 |
R-free | 0.17180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4obe |
RMSD bond length | 0.008 |
RMSD bond angle | 1.134 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.800 | 1.227 |
High resolution limit [Å] | 1.180 | 1.180 |
Rmerge | 0.060 | 0.327 |
Rmeas | 0.066 | 0.377 |
Rpim | 0.027 | 0.182 |
Number of reflections | 122556 | 5910 |
<I/σ(I)> | 12.9 | 2.98 |
Completeness [%] | 98.4 | |
Redundancy | 5.8 | |
CC(1/2) | 0.998 | 0.903 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 22% PEG3350, 200 mM lithium citrate, 10 uM GDP, 1 mM magnesium chloride, 2 mM DTT, 20 mM sodium chloride, 10 mM Tris-HCl, pH 8 |