8EDP
Crystal structure of a three-tetrad, parallel, and K+ stabilized homopurine G-quadruplex from human chromosome 7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 196 |
Detector technology | PIXEL |
Collection date | 2021-12-08 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 30.583, 40.927, 56.018 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.010 - 2.010 |
R-factor | 0.2468 |
Rwork | 0.243 |
R-free | 0.27810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g0f |
RMSD bond length | 0.008 |
RMSD bond angle | 1.483 |
Data reduction software | XDS |
Data scaling software | Aimless (1.19.2_4158) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 56.020 | 2.060 |
High resolution limit [Å] | 2.010 | 2.010 |
Number of reflections | 5027 | 374 |
<I/σ(I)> | 8.8 | |
Completeness [%] | 98.2 | |
Redundancy | 5.4 | |
CC(1/2) | 0.986 | 0.447 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298.15 | 0.05M MES 6.5, 0.3M potassium chloride, 40% MPD, 0.005M Hexaammine cobalt chloride |