8EBK
Crystal Structure Analysis of xHDMX in complex with the stapled peptide PROTAC analog
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.520, 108.400, 30.730 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.034 - 1.290 |
R-factor | 0.1647 |
Rwork | 0.164 |
R-free | 0.18730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6v4f |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.034 | 33.040 | 1.310 |
High resolution limit [Å] | 1.290 | 3.500 | 1.290 |
Rmeas | 0.054 | 0.029 | 1.683 |
Rpim | 0.015 | 0.008 | 0.462 |
Total number of observations | 22594 | 22433 | |
Number of reflections | 34837 | 1894 | 1711 |
<I/σ(I)> | 19.6 | 67.4 | 1.2 |
Completeness [%] | 99.9 | 100 | 99.8 |
Redundancy | 13.1 | 11.9 | 13.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100mM BisTris pH 6.0, 14.4% PEG 3350, 30mM ammonium sulfate |