Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8E6D

Crystal structure of MERS 3CL protease in complex with a p-fluorophenyl dimethyl sulfane inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 19-ID
Synchrotron siteNSLS-II
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-06-06
DetectorDECTRIS EIGER2 XE 9M
Wavelength(s)0.9786
Spacegroup nameC 1 2 1
Unit cell lengths101.410, 57.238, 49.835
Unit cell angles90.00, 112.60, 90.00
Refinement procedure
Resolution46.810 - 2.700
R-factor0.2127
Rwork0.210
R-free0.26380
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5wkk
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.83048.8302.770
High resolution limit [Å]2.70012.0802.700
Rmerge0.1290.0520.684
Rmeas0.1520.0610.824
Rpim0.0800.0320.452
Total number of observations249692721735
Number of reflections707983538
<I/σ(I)>6.615.11.7
Completeness [%]96.491.998.7
Redundancy3.53.33.2
CC(1/2)0.9920.9970.731
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529125% (w/v) PEG 3350, 100 mM Bis-Tris pH 6.5, 200 mM sodium chloride

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon