8E2N
Crystal Structure of Nanobody VHH113 Specific for PA14 Cif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979106 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.083, 51.607, 75.991 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.390 - 1.100 |
R-factor | 0.1938 |
Rwork | 0.193 |
R-free | 0.21260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Structure of nanobody VHH113 complexed with it's antigen Cif (to be deposited) |
RMSD bond length | 0.006 |
RMSD bond angle | 0.856 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.390 | 1.139 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.093 | 1.343 |
Rmeas | 0.102 | 1.578 |
Rpim | 0.041 | 0.808 |
Number of reflections | 81669 | 7655 |
<I/σ(I)> | 8.89 | 0.78 |
Completeness [%] | 99.2 | 94.23 |
Redundancy | 6.1 | 3.5 |
CC(1/2) | 0.999 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292.8 | 17% (w/v) PEG3350, 150 mM magnesium formate |