8E2N
Crystal Structure of Nanobody VHH113 Specific for PA14 Cif
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS-II BEAMLINE 17-ID-2 |
| Synchrotron site | NSLS-II |
| Beamline | 17-ID-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-04-05 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.979106 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 51.083, 51.607, 75.991 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 42.390 - 1.100 |
| R-factor | 0.1938 |
| Rwork | 0.193 |
| R-free | 0.21260 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Structure of nanobody VHH113 complexed with it's antigen Cif (to be deposited) |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.856 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 42.390 | 1.139 |
| High resolution limit [Å] | 1.100 | 1.100 |
| Rmerge | 0.093 | 1.343 |
| Rmeas | 0.102 | 1.578 |
| Rpim | 0.041 | 0.808 |
| Number of reflections | 81669 | 7655 |
| <I/σ(I)> | 8.89 | 0.78 |
| Completeness [%] | 99.2 | 94.23 |
| Redundancy | 6.1 | 3.5 |
| CC(1/2) | 0.999 | 0.524 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 292.8 | 17% (w/v) PEG3350, 150 mM magnesium formate |






