Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8E2N

Crystal Structure of Nanobody VHH113 Specific for PA14 Cif

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-2
Synchrotron siteNSLS-II
Beamline17-ID-2
Temperature [K]100
Detector technologyPIXEL
Collection date2022-04-05
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979106
Spacegroup nameP 21 21 21
Unit cell lengths51.083, 51.607, 75.991
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.390 - 1.100
R-factor0.1938
Rwork0.193
R-free0.21260
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Structure of nanobody VHH113 complexed with it's antigen Cif (to be deposited)
RMSD bond length0.006
RMSD bond angle0.856
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.3901.139
High resolution limit [Å]1.1001.100
Rmerge0.0931.343
Rmeas0.1021.578
Rpim0.0410.808
Number of reflections816697655
<I/σ(I)>8.890.78
Completeness [%]99.294.23
Redundancy6.13.5
CC(1/2)0.9990.524
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP292.817% (w/v) PEG3350, 150 mM magnesium formate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon