8E09
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100E construct
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-26 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.7126 |
Spacegroup name | P 63 |
Unit cell lengths | 66.206, 66.206, 40.608 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.100 - 1.010 |
R-factor | 0.147 |
Rwork | 0.146 |
R-free | 0.16400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nwz |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.610 | 1.020 |
High resolution limit [Å] | 1.010 | 1.010 |
Rmerge | 0.146 | 3.137 |
Rmeas | 0.147 | 3.199 |
Rpim | 0.023 | 0.606 |
Total number of observations | 2188124 | 56554 |
Number of reflections | 53507 | 2164 |
<I/σ(I)> | 14.1 | 1.2 |
Completeness [%] | 99.1 | 81 |
Redundancy | 40.9 | 26.1 |
CC(1/2) | 0.999 | 0.549 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 20 mM potassium phosphate, pH 6.0, 1 M NaCl; 2.2 M ammonium sulfate |