8DZB
Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 45.780, 52.550, 113.537 |
Unit cell angles | 90.00, 100.23, 90.00 |
Refinement procedure
Resolution | 47.600 - 1.850 |
R-factor | 0.1846 |
Rwork | 0.183 |
R-free | 0.20960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7rn1 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.660 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Refinement software | REFMAC (5.8.0266) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.600 | 47.600 | 1.890 |
High resolution limit [Å] | 1.850 | 9.060 | 1.850 |
Rmerge | 0.087 | 0.044 | 0.443 |
Rmeas | 0.101 | 0.051 | 0.520 |
Rpim | 0.049 | 0.025 | 0.266 |
Number of reflections | 21495 | 188 | 1354 |
<I/σ(I)> | 9.8 | ||
Completeness [%] | 94.7 | 89.9 | 97.2 |
Redundancy | 3.7 | 3.6 | 3.7 |
CC(1/2) | 0.994 | 0.997 | 0.589 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 25% PEG 3350, 0.2 M AmSO4, 0.1 M HEPES 7.5 |