8DXG
HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-(trifluoromethyl)pyridin-2-ol at W24 site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-19 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 162.623, 73.003, 109.791 |
Unit cell angles | 90.00, 100.56, 90.00 |
Refinement procedure
Resolution | 38.090 - 2.100 |
R-factor | 0.202 |
Rwork | 0.201 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g1q |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.101 | 0.070 | 0.698 |
Rmeas | 0.118 | 0.081 | 0.824 |
Rpim | 0.061 | 0.041 | 0.431 |
Total number of observations | 257458 | ||
Number of reflections | 73464 | 3784 | 3654 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 99.9 | 99.6 | 99.8 |
Redundancy | 3.5 | 3.6 | 3.4 |
CC(1/2) | 0.991 | 0.660 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 10-12% PEG 8000, 4% PEG 400, 100 mM imidazole pH 6.4-6.6, 15 mM MgSO4, 100 mM amm sulfate, 5 mM TCEP |