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8DXC

[C:Hg2+/Ag+:C--pH 7.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-12
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.00743
Spacegroup nameH 3
Unit cell lengths106.517, 106.517, 90.597
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.660 - 5.040
R-factor0.2621
Rwork0.259
R-free0.31820
Structure solution methodSAD
RMSD bond length0.007
RMSD bond angle1.021
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwareAutoSol
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]64.6406.010
High resolution limit [Å]5.0405.040
Number of reflections2008404
<I/σ(I)>4.8
Completeness [%]81.0
Redundancy7.6
CC(1/2)0.9970.640
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529840 mM Tris, 125 mM Magnesium sulfate, 12 uM silver nitrate, 24 uM mercury chloride

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PDB entries from 2024-05-15

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