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8DX5

[C:Hg2+/Ag+:C--pH 5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-12
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.00743
Spacegroup nameH 3
Unit cell lengths107.012, 107.012, 88.628
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution39.980 - 5.900
R-factor0.3026
Rwork0.300
R-free0.37940
Structure solution methodSAD
RMSD bond length0.011
RMSD bond angle1.314
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwareAutoSol
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]64.0506.900
High resolution limit [Å]5.7105.710
Number of reflections1622408
<I/σ(I)>7.8
Completeness [%]83.8
Redundancy10.6
CC(1/2)0.9660.108
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP529840 mM Tris, 125 mM Magnesium sulfate, 12 uM silver nitrate, 24 uM mercury chloride

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PDB entries from 2024-05-15

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