8DX2
HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-amino-3-bromopyridine at multiple sites
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-19 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 161.918, 73.261, 109.247 |
Unit cell angles | 90.00, 100.38, 90.00 |
Refinement procedure
Resolution | 38.050 - 2.000 |
R-factor | 0.1898 |
Rwork | 0.188 |
R-free | 0.24340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g1q |
RMSD bond length | 0.009 |
RMSD bond angle | 0.990 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_3051) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.076 | 0.054 | 0.578 |
Rmeas | 0.092 | 0.065 | 0.707 |
Rpim | 0.051 | 0.036 | 0.399 |
Number of reflections | 85019 | 4349 | 3981 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 98.0 | 98.1 | 93.2 |
Redundancy | 3.1 | 3.1 | 2.9 |
CC(1/2) | 0.987 | 0.548 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 10-12% PEG 8000, 4% PEG 400, 100 mM imidazole pH 6.4-6.6, 15 mM MgSO4, 100 mM amm sulfate, 5 mM TCEP |