8DSJ
Peptidylglycine alpha hydroxylating monooxygenase anaerobic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 |
Unit cell lengths | 38.140, 53.263, 86.424 |
Unit cell angles | 84.85, 89.96, 78.50 |
Refinement procedure
Resolution | 37.400 - 2.800 |
R-factor | 0.2012 |
Rwork | 0.197 |
R-free | 0.27490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1phm |
RMSD bond length | 0.006 |
RMSD bond angle | 1.472 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.400 | 10.000 | 1.840 |
High resolution limit [Å] | 1.800 | 8.000 | 1.800 |
Rmerge | 0.169 | 0.162 | |
Rmeas | 0.172 | ||
Rpim | 0.057 | ||
Number of reflections | 57073 | 485 | 2118 |
<I/σ(I)> | 3.6 | ||
Completeness [%] | 92.8 | 98.8 | 57.5 |
Redundancy | 7.9 | 8.8 | 4.8 |
CC(1/2) | 0.855 | 0.982 | 0.328 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 1.5 uL of WT PHM protein at 17 mg/mL in 20 mM sodium phosphate, pH 7.5 was added to 1.5 uL of mother liquor solution containing 16-18% PEG 20K, 20-250 mM sodium citrate, and 2 mM CuSO4. Plates were sealed using transparent tape. Crystals were formed within one week, and these initial crystals were used to seed succeeding trays using the same crystal conditions. Seeding was performed using a Hampton Research seed bead and Hampton Research seeding tool. Initial crystals (5-7 crystals) were vortexed with seed beads for 30 seconds in 30 uL mother liquor, and streaked into a new drop using the seeding tool. |