8DQM
Crystal structure of isoaspartyl aminopeptidase from Roseivivax halodurans DSM 15395
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.522 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.222, 154.593, 197.911 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 98.960 - 2.700 |
R-factor | 0.2445 |
Rwork | 0.243 |
R-free | 0.26790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold model |
RMSD bond length | 0.013 |
RMSD bond angle | 1.797 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 98.960 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.035 | 0.156 |
Number of reflections | 59664 | 5893 |
<I/σ(I)> | 7.76 | 0.58 |
Completeness [%] | 99.9 | |
Redundancy | 11.2 | |
CC(1/2) | 0.998 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M bis-tris propane pH 8.5, 0.2 M disodium malonate and 25% PEG3350 |