8DPA

Crystal structure of the homodimeric AvrM14-B Nudix hydrolase effector from Melampsora lini

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site	Australian Synchrotron
Beamline	MX2
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-09-14
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.9537
Spacegroup name	P 41 21 2
Unit cell lengths	79.663, 79.663, 201.317
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	35.630 - 1.840
R-factor	0.1912
Rwork	0.190
R-free	0.22150
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	AvrM14-B Monomer
RMSD bond length	0.010
RMSD bond angle	0.959
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER (1.19_4092)
Refinement software	PHENIX (1.19_4092)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	35.630	1.905
High resolution limit [Å]	1.839	1.839
Rmerge	0.089
Rmeas	0.093
Rpim	0.028
Number of reflections	57219	5572
<I/σ(I)>	16.34	0.84
Completeness [%]	99.5	96.36
Redundancy	11	10.8
CC(1/2)	0.999	0.484

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		291	1.8 M Ammonium sulphate 0.1 M Sodium acetate pH 4.2 - 4.4 0.1 M Magnesium chloride