8DOT
Structure of a methane clathrate binding protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.050, 79.050, 109.100 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.050 - 3.050 |
R-factor | 0.1955 |
Rwork | 0.192 |
R-free | 0.23110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | alphafold |
RMSD bond length | 0.009 |
RMSD bond angle | 1.126 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.050 | 3.159 |
High resolution limit [Å] | 3.050 | 3.050 |
Number of reflections | 7012 | 675 |
<I/σ(I)> | 25.17 | 7.27 |
Completeness [%] | 99.7 | |
Redundancy | 25 | |
CC(1/2) | 0.999 | 0.989 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.16 M sodium acetate trihydrate, 7.5% PEG 8,000 and 20% glycerol |