8DOS
Crystal structure of Ferredoxin (flavodoxin):NADP(+) oxidoreductase from Klebsiella pneumoniae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-24 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 1 |
Unit cell lengths | 47.240, 56.020, 56.110 |
Unit cell angles | 106.69, 97.49, 83.40 |
Refinement procedure
Resolution | 27.370 - 1.872 |
R-factor | 0.1723 |
Rwork | 0.171 |
R-free | 0.20380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 0.97949 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (0.97949) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 53.481 | 53.481 | 1.904 |
High resolution limit [Å] | 1.872 | 5.081 | 1.872 |
Rmerge | 0.074 | 0.031 | 0.326 |
Rmeas | 0.102 | 0.042 | 0.451 |
Rpim | 0.070 | 0.029 | 0.310 |
Total number of observations | 82827 | 4115 | 3906 |
Number of reflections | 42132 | 2125 | 2038 |
<I/σ(I)> | 7.9 | 19.9 | 2.2 |
Completeness [%] | 93.9 | 94.7 | 91.5 |
Redundancy | 2 | 1.9 | 1.9 |
CC(1/2) | 0.994 | 0.996 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | Morpheus A9: 20% (v/v) PEG 500 MME, 10% (w/v) PEG 20000, 100 mM Tris/BICINE, 30 mM MgCl2 and 30 mM CaCl2, KlpnC.00101.a.B1.PS38694 at 21.7 mg/mL, Tray: plate 12372 well A9 dro 2, Puck: PSL1202, Cryo: DIRECT |