8DOL
Mechanism of regulation of the Helicobacter pylori Cagbeta ATPase by CagZ
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AichiSR BEAMLINE BL2S1 |
Synchrotron site | AichiSR |
Beamline | BL2S1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-06-02 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979183 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 112.115, 163.277, 112.220 |
Unit cell angles | 90.00, 93.33, 90.00 |
Refinement procedure
Resolution | 40.790 - 2.800 |
R-factor | 0.198 |
Rwork | 0.197 |
R-free | 0.24690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold AF-O25260-F1 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.800 | 7.590 | 2.800 |
Rmerge | 0.073 | 0.033 | 0.950 |
Rmeas | 0.079 | 0.036 | 1.026 |
Rpim | 0.030 | 0.015 | 0.384 |
Total number of observations | 669386 | ||
Number of reflections | 97939 | 4980 | 4866 |
<I/σ(I)> | 7.8 | ||
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 6.8 | 6.3 | 7.1 |
CC(1/2) | 0.998 | 0.752 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 285 | 35% PEG400, 0.2 M Li2SO4, 0.1 M Tris 8.5 |