8DHC
Crystal structure of an i-motif from the HRAS promoter region
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 196 |
Detector technology | PIXEL |
Collection date | 2019-10-25 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 119.126, 29.656, 54.326 |
Unit cell angles | 90.00, 93.10, 90.00 |
Refinement procedure
Resolution | 59.480 - 2.020 |
R-factor | 0.2522 |
Rwork | 0.252 |
R-free | 0.25400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8cxf |
RMSD bond length | 0.011 |
RMSD bond angle | 1.228 |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.480 | 2.070 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.046 | 1.391 |
Rmeas | 0.054 | |
Rpim | 0.027 | 0.850 |
Number of reflections | 12489 | 817 |
<I/σ(I)> | 10.6 | 0.8 |
Completeness [%] | 97.8 | 87.5 |
Redundancy | 3.9 | 3.4 |
CC(1/2) | 0.997 | 0.765 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.001 M Spermine Tetrahydrochloride, 0.05 M MES pH 6.5, 17% w/v PEG 4K |