Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DCU

Lysozyme cluster 0028 (benzamidine ligand)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-12-14
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.92
Spacegroup nameP 43 21 2
Unit cell lengths79.590, 79.590, 37.760
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.830 - 2.000
R-factor0.21057
Rwork0.208
R-free0.26192
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4n8z
RMSD bond length0.006
RMSD bond angle1.482
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.120
High resolution limit [Å]2.0002.000
Rmerge0.4262.010
Number of reflections146962331
<I/σ(I)>2.1
Completeness [%]93.7
Redundancy3.64
CC(1/2)0.8610.159
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.62904% SODIUM CHLORIDE, 100MM SODIUM ACETATE PH 4.6, 120MG/ML

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon